The CHROMEVALOA Database: A Resource for the Evaluation of Okadaic Acid Contamination in the Marine Environment Based on the Chromatin-Associated Transcriptome of the Mussel Mytilus galloprovincialis
Date
2013
Authors
Suarez-Ulloa, Victoria
Fernandez-Tajes, Juan
Aguiar-Pulido, Vanessa
Rivera-Casas, Ciro
Gonzalez-Romero, Rodrigo
Ausio, Juan
Mendez, Josefina
Dorado, Julian
Eirin-Lopez, Jose M.
Journal Title
Journal ISSN
Volume Title
Publisher
Marine Drugs
Abstract
Okadaic Acid (OA) constitutes the main active principle in Diarrhetic Shellfish Poisoning (DSP) toxins produced during Harmful Algal Blooms (HABs), representing a serious threat for human consumers of edible shellfish. Furthermore, OA conveys critical deleterious effects for marine organisms due to its genotoxic potential. Many efforts have been dedicated to OA biomonitoring during the last three decades. However, it is only now with the current availability of detailed molecular information on DNA organization and the mechanisms involved in the maintenance of genome integrity, that a new arena starts opening up for the study of OA contamination. In the present work we address the links between OA genotoxicity and chromatin by combining Next Generation Sequencing (NGS) technologies and bioinformatics. To this end, we introduce CHROMEVALOAdb, a public database containing the chromatin-associated transcriptome of the mussel Mytilus galloprovincialis (a sentinel model organism) in response to OA exposure. This resource constitutes a leap forward for the development of chromatin-based biomarkers, paving the road towards the generation of powerful and sensitive tests for the detection and evaluation of the genotoxic effects of OA in coastal areas.
Description
Keywords
okadaic acid, Harmful Algae Blooms, mussels, chromatin, database, Mytilus galloprovincialis
Citation
Suárez-Ulloa, V., Fernández-Tajes, J., Aguiar-Pulido, V., Rivera-Casas, C., González-Romero, R., Ausio, J., Méndez, J., Dorado, J., & Eirín-López, J. M. (2013). The CHROMEOVALOA Database: A Resource for the Evaluation of Okadaic Acid Contamination in the Marine Environment Based on the Chromatin-Associated Transcriptome of the Mus